PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G19960.1
Common NameLOC102720176
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 347aa    MW: 36651.3 Da    PI: 6.7366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G19960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13137188155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr l+P++   ++++ + a+i+  A++++k+L+
  OB09G19960.1 137 QRMTHIAVERNRRKQMNEYLAVLRGLMPPS---YAQRGDQASIVGGAINFVKELE 188
                   79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.07E-13135192No hitNo description
Gene3DG3DSA:4.10.280.105.4E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.466136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALEAVLHSR GLFGRRCAME GGGGVGGGGG GGGGGWSGGL FGGFEGVMDL DGGNWDAAAC  60
SSMLLHGFQE LEIPVAAAVA PAPPGEHAVV VAAAGCAENA GGIGGGHQED QATAVQARRR  120
KRRRARAAKN REEVESQRMT HIAVERNRRK QMNEYLAVLR GLMPPSYAQR GDQASIVGGA  180
INFVKELEQL LQSLEARKSS RQCAARDAAA PFAGFFTFPQ YSMSATVAAP AVNDDVRDDG  240
GASAEAEASG SKPSAVADVE VTMVESHANL RVLSRRRPRQ LLRLVVALQG HRLTVLHLNM  300
TSAGHMVLYS FSLKVEDDCQ HTSVDEIATA VHQIIEKIQE EQGCSLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRRKRRR
2119123RKRRR
3137148RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053991e-152AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055741e-152AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149651e-152AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-152CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660722.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T44e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLJ3MYB70.0J3MYB7_ORYBR; Uncharacterized protein
STRINGOB09G19960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-52bHLH family protein